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Workshop on Data Mining in Life Sciences DMLS´2009
July 22, 2009, Leipzig/Germany
Workshop Chair
Isabelle Bichindaritz, University of Washington, USA
Mykola Pechenizkiy, Eindhoven University of Technology, The Netherlands
Workshop Committee
- Riccardo Bellazzi, University of Pavia, Italy
- Kung-Ma Chao, National Taiwan University, Taiwan
- Michel Dojat, UM INSERM-UJF U594 , France
- Peter Funk, Malardalen University, Sweden
- Sophia Katrenko University of Amsterdam, the Netherlands
- Xiaoqiu Huang, Iowa state University, USA
- Jingchu Luo, Peking University, China
- Stefania Montani, University of Piemonte Orientale, Italy
- Oleg Okun, Precise Biometrics, Sweden
- Petra Perner, Institute of Computer Vision and Applied Computer Sciences, Germany
- Frank-Michael Schleif, University Leipzig, Germany
- Rainer Schmidt, Institut fur Medizinische Informatik und Biometrie, Germany
- Malika Smail-Tabbone, LORIA, France
- Paolo Soda, Università Campus Bio-Medico di Roma, Italy
- Herna L. Viktor, University of Ottawa, Canada
Scope of the Workshop
Data mining in biology and medicine is a core component of biomedical informatics, and one
of the first intensive applications of computer science to this field, whether at the clinic,
the laboratory, or the research center. Following a long tradition of data exploration
stemming from biostatistical data analysis, todays's biomedical data mining appears more
multifaceted with advances in knowledge discovery in databases as well as machine learning
approaches.
The goals of this workshop are to:
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provide a forum for identifying important contributions and opportunities for
research on data mining as it applies to biological
and/or medical data,
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promote the systematic study of how to apply
data mining to biology and medicine, and
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show case applications of data mining in biology and medicine.
Some of the technical issues addressed, and potential outcomes of the workshop,
are to identify preferred types of mining methods, tools, and processes, preferred
domains of application, how to connect a data mining model with a problem to solve,
challenges specific to applying data mining to biology and medicine, and guidelines
to better develop data mining projects in this domain. We welcome all those interested
in the problems and promise of data mining in biology or medicine as well as in
bioinformatics, Human Genome Project, environmental sciences and agriculture.
Topics of interest include (but are not limited to):
With regard to different types of data:
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Discovery of high-level structures, including e.g. association networks
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Text mining from biomedical literatur
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Medical images mining
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Biomedical signals mining
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Temporal and sequential data mining
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Mining heterogeneous data
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Mining data from molecular biology, genomics, proteomics, pylogenetic classification
With regard to different methodologies and case studies:
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Data mining project development methodology for biomedicine
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Integration of data mining in the clinic
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Ontology-driver data mining in life sciences
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Methodology for mining complex data, e.g. a combination of laboratory test results,
images, signals, genomic and proteomic samples
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Data mining for personal disease management
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Utility considerations in DMLS, including e.g. cost-sensitive learning
-
We particularly welcome case studies and applications and discussions of
the lessons learned from such case studies
Workshop Format
In this workshop we intend to bring scientists together and actively identify common
research threads, define open problems, and develop collaborative contacts. We aimed at
providing an informal atmosphere where participants are encouraged to ask clarifying
questions throughout the talks and to participate in longer discussions after each
presentation. Since we anticipate varied backgrounds of the participants, we will encourage
speakers to present their work from a big-picture perspective and to clearly identify key
issues in their research before they dive into technical details.
A wrap-up round table discussion will summarize the lessons learnt, issues identified,
and future directions.
Submission Requirements
Papers will be published in the workshop proceedings by IBaI Publishing.
PostScript (compressed and uuencoded) or PDF paper submissions should be formatted
according to Springer LNCS format, with a maximum of ten pages. Author's instructions
along with LaTeX and Word macro files are available on the web at
http://www.springer.de/comp/lncs/authors.html
.
Please e-mail your submission to Mykola Pechenizkiy
m.pechenizkiy@tue.nl
and Isabelle Bichindaritz
ibichind@u.washington.edu
with "DMLS09 submission" in the subject field.
Authors of the selected papers from the workshop will be invited to submit their revised
and extended papers to a journal special issue.
Dates
Submission Deadline: April 30th, 2009
Notification Date: May 31st, 2009
Camera-Ready Deadline: June 10th, 2009
Workshop date: July 22nd, 2009
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